2010 Publications

2006 | 2007 | 2008 | 2009 | 2010

J. Ghosh, M. Bogdan, A. Chakrabarti, F. Frommelet. 2010/2011. On Optimality of the BH multiple test. Ann. Statist.
J. Ghosh, G Ang Shen. 2010/11. IBIC for change point problems. JSI.
Gunaratna, N.S., De Groote, H., Nestel, P. Pixley, K.V., and McCabe, G.P. 2010. A meta-analysis of community-based studies on quality protein maize. Food Policy, 35:202-210.
Sellaro, TL, Ranade A, Faulk D, McCabe GP, Dorko K, Badylak SF, and Strom, SC. 2010. Maintenance of human hepatocyte function in vitro by liver derived extracellular matrix gels. Tissue Engineering: Part A 16(3): 1075-1082.
Lipka AE, McCabe GP, and Doerge RW. 2009. Associating SNPS with binary traits. Proceedings of the Kansas State Conference in Applied Statistics in Agriculture), Manhattan, KS, 5-19.
Cheong JMK, Gunaratna NS, McCabe GP, Jackson G, Kempa-Steczko A, and Weaver CM. 2010. Bone seeking labels as markers for bone turnover: validation of urinary excretion in rats. Osteoporosis International, 22: 153-157.
Thurnham DI, McCabe LD, Haldar S, Wieringa FT, Northrop-Clewes CA, and McCabe GP. 2010. Adjusting plasma ferritin concentrations to remove effects of subclinical inflammation in the assessment of iron deficiency: a meta-analysis. American Journal of Clinical Nutrition, 92:546-555.
Lee, WH, McCabe, GP, Martin, BR, Weaver, CM. 2011. Validation of a simple isotope method for estimating true fractional absorption in adolescents. Osteoporosis International, 22:159-166.
Wu L, Martin BR, Wastney ME, McCabe GP, McCabe LD, DiMeglio LA, Peacock M, and Weaver, CM. 2010. Calcium requirements and metabolism in Chinese American boys and girls. Journal of Bone and Mineral Research 25(8):1842-1849.
Hill KM, McCabe GP, McCabe LD, Gordon CM, Abrams SA, and Weaver CM. 2010. The relationship of serum 25-hydroxyvitamin D and parathyroid hormone from multi-site pooled data in children and adolescents. Journal of Nutrition, 140:1983-1988.
Lee, WH, McCabe, GP, Martin, BR, Weaver, CM. 2010. Simple isotope method using oral stable or radioactive tracers for estimating true fractional absorption in adult women. Osteoporosis International, DOI 10.1007/s00198-1-1420-1.
Park CY, Hill KM, Elble AE, Martin BR, DiMeglio LA, Peacock M, McCabe GP, and Weaver CM. 2010. Daily supplementation with 25Î¼g cholecalciferol does not increase calcium absorption or skeletal retention in adolescent girls with low serum 25-hydroxyvitamin D. Journal of Nutrition 140: 2139-2144.
Osborne DL, Weaver CM, McCabe LD, McCabe GP, Novotny R, Boushey C, and Savaiano, D. 2010. Skin pigmentation does not predict bone mass in adolescent females living in Hawaii. American Journal of Human Biology.
N. Ding, Y. Qi, R. Xiang, I. Molloy, N. Li. 2010. Approximate inference for nonparametric Bayesian matrix factorization, Journal Machine Learning Research, W & CP 9, vol. 9.
M. Yakout, A. K. Elmagarmid, H. Elmeleegy, M. Ouzzani, Y. Qi. 2010. Behavior Based Record Linkage, The Proceedings of the VLDB Endowment (PVLDB Journal Track).
B. Bodenmiller, S. Wanka, C. Kraft, J. Urban, D. Campbell, P. Pedrioli, B. Gerrits, P. Picotti, H. Lam,
O. Vitek, M.-Y. Brusniak, B. Roschitzki, C. Zhang, R. Schlapbach, K. Shokat, A. Colman-Lerner, A.
Nesvizhskii, M. Peter, R. Loewith, C. von Mering and R. Aebersold. 2010. Phosphoproteomic analysis
reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast.
Science Signaling, 3, rs4, IF 31.05
I. Baxter, J. N. Brazelton, D. Yu, Y. S. Huang, B. Lahner, E. Yakubova, Y. Li, J. Bergelson, J. O.
Borevitz, M. Nordborg, O. Vitek, D. E. Salt. 2010. A coastal cline in sodium accumulation in Arabidopsis
thaliana is driven by natural variation of the sodium transporter AtHKT1;1. PLoS Genetics, in press,
IF 10.00
A. L. Dill, L. S. Eberlin, A. B. Costa, C. Zheng, D. R. Ifa, L. Cheng, T. A. Masterson, M. O. Koch,
O. Vitek, and R. G. Cooks. 2010. Molecular pathology and classification based on lipid profiles of human
carcinoma of the urinary bladder using imaging mass spectrometry. Chemistry: An European Journal.
Available online, IF 5.56.
M. Zhang, D. Zhang and M.T. Wells. 2010. Generalized thresholding estimators for high-dimensional location parameters. Statistica Sinica, 20: 911-926
N.-H. Chan, L. Peng and D. Zhang. 2010. Empirical-likelihood-based confidence intervals for conditional variance in heteroscedastic regression models. Econometric Theory, 27: 1-24.
Zhang, M. 2010. Bayesian classification method for QTL mapping. Bayesian Modeling in Bioinformatics, edited by Dey, Ghosh and Mallick.
Zhang, M. and Cowen, M. 2010. Statistical based analysis and modeling. Handbook of Healthcare Delivery Systems, edited by Yih.
Buescher, E. Achberger, T. Amusan, I. Giannini, A. Ochsenfeld, C. Rus, A. Lahner, B. Hoekenga, O. Yakubova, E. Harper, J.F., Guerinot, M.L., Zhang, M. Salt, D.E., Baxter, I.R. 2010. Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences. PLoS One, 5(6):e11081.
Sari, Y, Zhang, M. and Mechref, Y. 2010. Differential expression of proteins in fetal brains of alcohol-treated prenatally C57BL/6 mice: a proteomic investigation. Electrophoresis, 31(3): 483-496.
S-H. Cho and H. Chun. 2010. Visualizing abnormal climate changes in central America from 1995 to 2000 Data EXPO 2006. Computational Statistics, In Press.
D. Pignatta, B.P. Dilkes, S.-Y. Yoo, I.M. Henry, A. Madlung, R.W. Doerge, Z. J. Chen, L. Comai. 2010. Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. New Phytologist. 186(1):194-206.
A. Rau, F. Jaffrezic, J.-L. Foulley, and R.W. Doerge. 2010. An empirical Bayesian method for estimating biological networks from temporal microarray data. Statistical Applications in Molecular Biology and Genetics. 9(1) Article 9.
M. Bremer_ and R.W. Doerge. 2010. Statistics at the Bench: A Step-by-Step Handbook for Biologists. Cold Spring Harbor Press. Cold Spring Harbor, NY.
P.L. Auer and R.W. Doerge. 2010. Statistical design and analysis of RNA sequencing data. Genetics. 185: 405-416.
A.A. Long, C. Mahapatra, H.-T. Leung, E.A. Woodru_ III, J. Rohrbough, L. An, R.W. Doerge, M.M. Metzstein, S. Shino, W.L. Pak, and K. Broadie. 2010. The nonsense-mediated decay pathway is critical for maintaining synapse architecture and synaptic vesicle cycle efficacy. Journal of Cell Science. 3303-3315.
L. Yu and R.W. Doerge. 2010. A semi-non-parametric mixture model for selecting functionally consistent proteins. BMC Bioinformatics. 11:486 doi:10.1186/1471-2105-11-486.
P.L. Auer and R.W. Doerge. 2010. Functional Divergence of Duplicated Genes in the Soybean Genome. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp171-185.
A. Rau, F. Jaffrezic, J.-L. Foulley, and R.W. Doerge 2010. Approximate Bayesian Approaches for Reverse Engineering Biological Networks. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp202-216.
G. Olbricht, B.A. Craig, and R.W. Doerge. 2010. Modeling DNA methylation tiling array data. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp63-84.
S. Srivastava and R.W. Doerge. 2010. A non-parametric empirical Bayes approach for estimating transcript abundance in unreplicated next-generation sequencing data. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp230-244.
T. Achberger, J.C. Fleet, D.E. Salt, and R.W. Doerge. 2010. Introduction to selecting subsets of traits for quantitative trait loci analysis. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp267-286.