2009 Publications

2006 | 2007 | 2008 | 2009 | 2010

• Olbricht GR, Sardesai N, Gelvin SB, Craig BA, and Doerge RW. 2009. Statistical methods for Affymetrix tiling array data, The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture, Manhattan, KS (in press)
• Xu H, Weiner M, Paul S, Thomas III J, Craig BA, Rosenman M, Doebbeling CC, and Sands LP. Volume of home- and community-based medicaid waiver services and risk of hospital admissions, Journal of the American Geriatrics Society, in press.
• Greene SN, Ramos-Vara JA, Craig BA, Hooser SB, Anderson C, Fourez LM, Johnson BM, Stewart JC, and Knapp DW 2009. Effects of cyclooxygenase inhibitor treatment on the renal toxicity of cisplatin in rats, Cancer Chemotherapy and Pharmacology, 10.1007/s00280-009-1061-2.
• Fleming-Waddell JN, Olbricht GR, Taxis TM, White JD, Vuocolo T, Craig BA, Tellam RL, Neary MK, Cockett NE, and Bidwell CA 2009. Effect of DLK1 and RTL1 but not MEG3 or MEG8 on muscle gene expression in callipyge lambs, Plos ONE, 4(10), e7399.
• Modi A, Weiner M, Craig BA, Sands LP, Rosenman MB, and Thomas J 2009. Concomitant use of anticholinergics with acetylcholinesterase inhibitors in medicaid recipients with dementia and residing in nursing homes, Journal of the American Geriatrics Society, 57(7), 1238-1244.
• Singh R, Martin BR, Hickey Y, Teegarden D, Campbell WW, Craig BA, Schoeller DA, Kerr DA, and Weaver CM. Comparison of self-reported and measured metabolizable energy intake with total energy expenditure in overweight teens, American Journal of Clinical Nutrition, 89(6), 1744-1750.
• Knapp, S.M. and Craig, B.A. Incorporating genotyping error into non-invasive DNA-based mark-recapture population estimates, Journal of Wildlife Management, 73(4), 598-604.
• Xu, H. and Craig, B.A. 2009. A probit latent class model with general correlation structures for evaluating accuracy of diagnostic tests, Biometrics, 65(4), 1145-1155.
• Sands LP, Xu, H, Craig, BA, Eng, C, and Covinsky, KE. Predicting Change in Functional Status over Quarterly Intervals for Older Adults Enrolled in the PACE Community-based Long-term Care Program, Aging Clinical and Experimental Research, 20(5), 419-427.
• J. Ghosh, S.T. Tokdar and R. Martin. 2009. Consistency of a Recursive Estimate of Mixing Distributions, Ann. Statist., Vol. 37, pp 2502-2522.
• J. Ghosh, S. T. Tokdar and A. Chakrabarti. 2009. Bayesian Nonparametric Goodness of Fit Tests, to appear in a volume for James O. Berger, published by Springer.
• Eicher-Miller HA, Mason AC, Weaver CM, McCabe GP, and Boushey CJ. 2009. Food insecurity is associated with iron deficiency anemia in US adolescents. American Journal of Clinical Nutrition, in press, available on line.
• Gunaratna NS, De Groote H, Nestel P, Pixley KV, and McCabe GP. 2009. A meta-analysis of community-based studies on quality protein maize. Food Policy, in press, available on line.
• Cheong JMK, Gunaratna NS, McCabe GP, Jackson G, and Weaver CM. 2009. Bone seeking labels as markers for bone turnover: effect of dosing schedule on labeling various bone sites in rats. Calcified Tissue International 85:444-450.
• Brown BN, Valentin JE, Stewart-Akers AM, McCabe GP, and Badylak SF. 2009. Macrophage phenotype and remodeling outcomes in response to biologic scaffolds with and without a cellular component. Biomaterials 30: 1482-1491.
• McKiernan F, Hollis JH, McCabe G, Mattes RD. 2009. Thirst-drinking hunger-eating; tight coupling Journal of the American Dietetic Association 109(3): 486-490.
• Eicher-Miller, H., Mason, A., Abbott, A. R., McCabe, G. P., and Boushey, C. J. 2009. The effect of food stamp nutrition education on the food insecurity of low-income women participants. Journal of Nutrition Education and Behavior 41(3): 161-168.
• Weaver, CM, Martin, BR, Jackson, GS, McCabe, GP, Nolan, JR, McCabe, LD, Barnes, S, Reinwald, S, Boris, ME, and Peacock M. 2009. Antiresorptive effects of phytoestrogen supplements compared to estradiol or residronate in postmenopausal women using 41Ca methodology. Journal of Clinical Endocrinology and Metabolism 94: 3798-3805.
• Sellaro, TL, Ranade A, Faulk D, McCabe GP, Dorko K, Badylak SF, and Strom, SC. 2009. Maintenance of human hepatocyte function in vitro by liver derived extracellular matrix gels. Tissue Engineering: Part A DOI: 10.1089/ten.tea.1008.0587.
• F. Yan, N. Xu, Y. Qi, 2009. Parallel Inference for Latent Dirichlet Allocation on Graphics Processing Units, Advances in Neural Information Processing Systems, MIT press.
• A. L. Oberg, O. Vitek. \Statistical design of quantitative mass spectrometry-based proteomic experiments". Journal of Proteome Research, in press, 2009.
• T. Clough, M. Key, I. Ott, S. Ragg, G. Schadow, O. Vitek. 2009. Protein quantification in label-free LC-MS experiments. Journal of Proteome Research, 8, p. 5275-5284, 2009. IF 5.68.
• C. Sherwood, A. Eastham, L. W. Lee, J. Risler, O. Vitek, D. B. Martin. 2009. Correlation between y-type ions observed in ion trap and triple quadrupole mass spectrometers, Journal of Proteome Research,
• 8, p. 4243-4251, 2009. IF 5.68.
• S. Zhang, C. Zheng, I. R. Lanza, K. S. Nair, D. Raftery, O. Vitek. 2009. Interdependence of signal processing and analysis of urine 1H NMR spectra for metabolic profiling. Analytical Chemistry, 81, p. 6080-6088, 2009. IF 5.71.
• Chien Hsun Huang, Lei Cong, Jun Xie, Bo Qiao, Shaw-Hwa Lo and Tian Zheng, “Rheumatoid Arthritis-Associated Gene-Gene Interaction Network for Rheumatoid Arthritis Candidate Genes”, Proceedings of the Genetic Analysis Workshop 16, 2009, refereed conference paper, accepted with minor revisions.
• Bo Qiao, Chien Hsun Huang, Lei Cong, Jun Xie, Shaw-Hwa Lo and Tian Zheng, “Genome-Wide Gene-Based Analysis of Rheumatoid Arthritis-Associated Interaction with PTPN22 and HLA-DRB1”, Proceedings of the Genetic Analysis Workshop 16, 2009, refereed conference paper, accepted with minor revisions
• D. Zhang, Y. Lin and M. Zhang. 2009. Penalized orthogonal-components regression for large p small n data. Electronic Journal of Statistics, 3: 781-796.
• Y. Lin, M. Zhang, L. Wang, V. Pungpapong, J.C. Fleet, and D. Zhang. 2009. Simultaneous genome-wide association studies of anti-CCP in rheumatoid arthritis using penalized orthogonal-components regression. BMC Proceedings, 3 (Suppl 7): S20.
• M. Zhang, Y. Lin, L. Wang, V. Pungpapong, J.C. Fleet, and D. Zhang, 2009. Case-control genome-wide association study of rheumatoid arthritis from GAW16 using POCRE-LDA. BMC Proceedings, 3 (Suppl 7): S17.
• N. Liu, D. Zhang and H. Zhao. 2009. Detection of genotyping errors without replicates in samples from unrelated individuals. Human Heredity, 67: 154-162.
• L. Zeng, G. Salvendy, M. Zhang. 2009. Factor Structure of Web Site Creativity. Computers in Human Behavior, 25:568-577.
• Jedicka SS, Dadarlat M, Hassell T, Lin Y, Zhang M, Irazoqui P, Rickus J. 2009. Calibration of neurotransmitter release from neural cells for therapeutic implants. International Journal of Neural Systems, 19: 197-212.
• Mechref Y, Hussein A., Bekesova S, Punpapong V, Zhang M, Dobrolecki LE, Hickey RJ, Hammoud ZT, Novotny MV. 2009. Quantitative serum glycomics of esophageal adenocarcinoma and other esophageal disease onsets. Journal of Proteome Research, 8: 2656-2666.
• R.T. Gaeta, S.-Y. Yoo_, J.C. Pires, R.W. Doerge, Z.J. Chen, and T.C. Osborn. 2009. Analysis of gene expression in resynthesized Brassica napus allopolyploids using Arabidopsis 70mer oligo microarrays. Public Library of Science (PLoS) ONE 4(3): e4760. doi:10.1371/journal.pone.0004760 .
• M. Bremer and R.W. Doerge. 2009. The KM-Algorithm identifies genes in time series gene expression data. Advances in Bioinformatics. Volume 2009, Article ID 284251, 10 pages, doi:10.1155/2009/284251.
• N. C. Riddle, H. Jiang_, L. An_, R.W. Doerge, and J.A. Birchler. 2009. Gene expression analysis at the intersection of ploidy and hybridity in maize. Theoretical and Applied Genetics. 120(2):341-353.
• R.W. Doerge and K. Kim_. 2009. Statistical challenges in modeling expression quantitative traits. Proceedings of the 24th International Workshop on Statistical Modelling. James E. Booth, Editor, pp13-22.
• G.R. Olbricht, N. Sardesai, S.B. Gelvin, B.A. Craig, and R.W. Doerge. 2009. Statistical methods for Affymetrix tiling array data. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp111-125.
• P. L. Auer and R.W. Doerge. 2009. Statistical issues in next generation sequencing. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp69-84.
• A. Lipka, G. McCabe and R.W. Doerge. 2009. Associating SNPs with binary traits. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp5-19.
• C. Ochsenfeld, K. Jennings, and R.W. Doerge. 2009. Mapping QTL with covariates. The Proceedings of the Kansas State University Conference on Applied Statistics in Agriculture. Manhattan, KS. pp126-140.