1. Sun, Z. and Zhu, Y. (2012). Systematic Comparison of RNA-Seq Normalization Methods Using System of Measurement Error Models. Bioinformatics. To Appear.
  2. Wu, H., Qin, Z., and Zhu, Y. (2012). MP-Seq: Using Finite Poisson Mixture Models for RNA-Seq Data Analysis and Transcript Expression Level Quantification. Statistics in Biosciences.To Appear.
  3. Zhong, W., Zhang, T., Zhu, Y and Liu, J. S. (2012). Correlation Pursuit: Forward Stepwise Variable Selection for Index Models. Journal of Royal Statistical Society, Ser B. To Appear.
  4. Hu M, Zhu Y, Taylor JMG, Liu JS, Qin ZS. (2012). Using Poisson Mixed-Effects Model to Quantify Exon-Level Gene Expression in RNA-seq. Bioinformatics. 28, 63-68
  5. Zeng, P., He T. and Zhu, Y. (2012). A Lasso-Type Approach for Estimation and variable Selection in Single Index Models Journal of Computational and Graphical Statistics. 21, 92-109.
  6. Zhang, T., Wan, H. and Zhu, Y. (2012). Detection and Localization of Hidden Radioactive Sources with Spatial Statistical Methods. Annals of Operation Research. 192, 87-104.
  7. Zeng, P., Wan, H., and Zhu, Y. (2011). A Coset Patter Identity Between a 2n-p Design and its Complement. Statistica Sinica. 12, 1453-1471.
  8. Tokdar, S., Zhu, Y., and Ghosh, J. K. (2010). Bayesian Density Regression with Logistic Gaussian Process and Subspace Projection. Bayesian Analysis. 5, 319-344.
  9. Zeng, P. and Zhu, Y. (2010). An Integral Transform Method for Estimating Central Mean and Central Subspaces. Journal of Multivariate Analysis. 101, 271-290.
  10. Zeng, P., Zhu, Y. and Phelps, K. T. (2009). Bounds on the Maximum Number of Factors in Designs with Two Distinct Groups of Factors. Communications in Statistics-Theory and Methods. 39, 2302-2310.
  11. Liu, L., Levine, M. and Zhu, Y. (2009). A Functional EM Algorithm for Mixing Density Estimation via Nonparametric Penalized Likelihood Maximization. Journal of Computational and Graphical Statistics. Vol 18, 481-504.
  12. Fan, X., Liu, S. S., and Zhu, M. (2008). An Innovative Approach Examining the Asymmetrical and Nonlinear Relationship between Attribute-Level Performance and Service Outcomes. Advances in Consumer Research. 36, 569-570.
  13. Zhu, Y., Zeng, P. and Jennings, K. (2007). Optimal Compound Orthogonal Arrays and Single Arrays for Robust Parameter Design Experiments. Technometrics. 49, 440-453.
  14. Zhu, Y. and Wu, C.F.J. (2007). Structure Functions for Regular sl-m Designs With Multiple Groups of Factors. Statistica Sinica. 17, 1239-1259.
  15. Liu, L. and Zhu, Y. (2007). Partially Projected Gradient Algorithms for Calculating Nonparametric Maximum Likelihood Estimates of Mixing Distributions. Journal of Statistical Planning and Inferences. 137, 2509-2522.
  16. Zhu, Y. and Zeng, P. (2006). Fourier Methods for Estimating the Central Subspace and the Central Mean Subspace in Regression. Journal of the American Statistical Association Vol. 101, 1638-1651.
  17. Feng, R., Cai, L., and Zhu, Y. (2006). Long Haul Travel Attitude Construct and Relationship to Behavior-The Case of French Travelers. Journal of Travel and Tourism Marketing. Vol. 20, 1-11.
  18. Zhong, W., Peng, Z., Ma, P., Liu, J.S. and Zhu, Y. (2005). RSIR: Regularized Sliced Inverse Regression for Motif Discovery. Bioinformatics. Vol. 21, 4169-4175.
  19. Zhu, Y. and Zeng, P. (2005). On the Coset Pattern Matrices and Minimum $M$-Aberration of 2n-p Designs. Statistica Sinica. Vol.15, 717-730.
  20. Lin, X., Clifton, C., and Zhu, M. (2005). Privacy Preserving Clustering with Distributed EM Mixture Modeling. Knowledge and Information Systems, An International Journal. Vol.8, No.1, 68-81.
  21. Zhu, Y. and Liu, L. (2004). Optimal Randomization for Privacy Preserving Data Mining. In KDD '04: Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 761-766.
  22. Lin, X. and Zhu, Y. (2004). A Degenerate Expectation-Maximization Algorithm for Local Dimension Reduction. In Proceedings of the 2004 meeting of International Federation of Classification Society. 259-269.
  23. Zhu, Y. (2003). Structure Function for Aliasing Patterns in 2l-n Design with Multiple Groups of Factors. The Annals of Statistics. Vol. 31, No. 3, 995-1011.
  24. Wu, C.F.J. and Zhu, Y. (2003). Optimal Selection of Single Arrays for Parameter Design Experiments. Statistica Sinica. Vol. 12, No. 4, 1179-1199.
  25. Clifton, C., Kantarcioglu, M., Lin, X., Vaidya, J. and Zhu, Y. (2002). Tools for Privacy Preserving Distributed Data Mining. SIGKDD Explorations. Vol.4, No.2, 28-34.


  1. Sun, Z, Kuscek, T. and Zhu, Y. Statistical Calibration of qRT-PCR, Microarray and RNA-Seq Gene Expression Data with Measurement Error Models. Journal of American Statistical Association. Under Review.
  2. Liu, S. and Zhu, Y. From Good to Great: Nonlinear Improvement of Healthcare Service. Journal of Service Research Under revision.
  3. Guo, Y. Zhu, Y., Proctor, R. and Salvendy, G. Axiomatic Usability Evaluation Method for Complex Information Appliances. Under Review.
  4. Kwon, B. C., Yi, J. S., and Zhu, Y. ReadingMate: A New Device for Enhancing Reading While Running on a Treadmill. Under Revision.

Book or Chapter

  1. Sun, Z., Wu, H., Qin, Z., and Zhu, Y. (2012). Model-Based Methods for Transcript Expression Level Quantification in RNA-Seq in Advances in Statistical Bioinformatics: Models and Integrative Inference for High-Throughput Data,edited by Do, K-A., Qin, S. and Vannucci, M. Cambridge University Press. To Appear.
  2. Vaidya, J., Clifton, C. and Zhu, M. (2005). Privacy Preserving Data Mining. Advances in Information Security Vol.19. Springer-Verlag. ( link )
  3. Zhu, Y. (2008). Product Array Deisgns in Encyclopedia of Statistics in Quality and Reliability edited by Ruggeri, F, Kenett, R. S. and faltin, F. W. Wiley ( link)