Publications
Published
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Sun, Z. and Zhu, Y. (2012). Systematic Comparison of RNA-Seq Normalization Methods Using System of Measurement Error Models. Bioinformatics. To Appear.
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Wu, H., Qin, Z., and Zhu, Y. (2012). MP-Seq: Using Finite Poisson Mixture Models for RNA-Seq Data Analysis and Transcript Expression Level Quantification. Statistics in Biosciences.To Appear.
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Zhong, W., Zhang, T., Zhu, Y and Liu, J. S. (2012). Correlation Pursuit: Forward Stepwise Variable Selection for Index Models.
Journal of Royal Statistical Society, Ser B. To Appear.
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Hu M, Zhu Y, Taylor JMG, Liu JS, Qin ZS. (2012).
Using Poisson Mixed-Effects Model to Quantify Exon-Level Gene Expression in RNA-seq.
Bioinformatics. 28, 63-68
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Zeng, P., He T. and Zhu, Y. (2012). A Lasso-Type Approach for Estimation and
variable Selection in Single Index Models Journal of Computational
and Graphical Statistics. 21, 92-109.
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Zhang, T., Wan, H. and Zhu, Y. (2012). Detection and Localization of Hidden Radioactive Sources with
Spatial Statistical Methods. Annals of Operation Research. 192, 87-104.
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Zeng, P., Wan, H., and Zhu, Y. (2011). A Coset Patter Identity Between a 2n-p Design
and its Complement. Statistica Sinica. 12, 1453-1471.
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Tokdar, S., Zhu, Y., and Ghosh, J. K. (2010). Bayesian Density
Regression with Logistic Gaussian Process and Subspace Projection. Bayesian Analysis. 5,
319-344.
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Zeng, P. and Zhu, Y. (2010). An Integral Transform Method for
Estimating Central Mean and Central Subspaces. Journal of Multivariate Analysis. 101, 271-290.
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Zeng, P., Zhu, Y. and Phelps, K. T. (2009). Bounds on the Maximum
Number of Factors in Designs with Two Distinct Groups of Factors.
Communications in Statistics-Theory and Methods. 39, 2302-2310.
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Liu, L., Levine, M. and Zhu, Y. (2009). A Functional EM Algorithm for
Mixing Density Estimation via Nonparametric Penalized Likelihood Maximization.
Journal of Computational and Graphical Statistics. Vol 18, 481-504.
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Fan, X., Liu, S. S., and Zhu, M. (2008). An Innovative Approach Examining the Asymmetrical and
Nonlinear Relationship between Attribute-Level Performance and Service Outcomes.
Advances in Consumer Research. 36, 569-570.
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Zhu, Y., Zeng, P. and Jennings, K. (2007). Optimal Compound Orthogonal Arrays and
Single Arrays for Robust Parameter Design Experiments.
Technometrics. 49, 440-453.
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Zhu, Y. and Wu, C.F.J. (2007). Structure Functions for Regular
sl-m Designs With Multiple Groups of Factors.
Statistica Sinica. 17, 1239-1259.
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Liu, L. and Zhu, Y. (2007). Partially Projected Gradient
Algorithms for Calculating Nonparametric Maximum Likelihood Estimates
of Mixing Distributions. Journal of Statistical
Planning and Inferences. 137, 2509-2522.
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Zhu, Y. and Zeng, P. (2006). Fourier Methods for Estimating the
Central Subspace and the Central Mean Subspace in Regression.
Journal of the American Statistical Association Vol. 101, 1638-1651.
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Feng, R., Cai, L., and Zhu, Y. (2006). Long Haul Travel Attitude Construct and
Relationship to Behavior-The Case of French Travelers.
Journal of Travel and Tourism Marketing. Vol. 20, 1-11.
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Zhong, W., Peng, Z., Ma, P., Liu, J.S. and Zhu, Y. (2005). RSIR:
Regularized Sliced Inverse Regression for Motif Discovery.
Bioinformatics. Vol. 21, 4169-4175.
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Zhu, Y. and Zeng, P. (2005). On the Coset Pattern Matrices and Minimum
$M$-Aberration of 2n-p Designs. Statistica Sinica. Vol.15,
717-730.
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Lin, X., Clifton, C., and Zhu, M. (2005). Privacy Preserving
Clustering with Distributed EM Mixture Modeling. Knowledge and
Information Systems, An International Journal. Vol.8, No.1, 68-81.
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Zhu, Y. and Liu, L. (2004). Optimal Randomization for Privacy
Preserving Data Mining. In KDD '04: Proceedings of the Tenth ACM SIGKDD
International Conference on Knowledge Discovery and Data Mining.
761-766.
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Lin, X. and Zhu, Y. (2004). A Degenerate Expectation-Maximization
Algorithm for Local Dimension Reduction. In Proceedings of the 2004
meeting of International Federation of Classification
Society. 259-269.
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Zhu, Y. (2003). Structure Function for Aliasing Patterns in 2l-n Design
with Multiple Groups of Factors. The Annals of
Statistics. Vol. 31, No. 3, 995-1011.
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Wu, C.F.J. and Zhu, Y. (2003). Optimal Selection of Single Arrays for
Parameter Design Experiments. Statistica Sinica. Vol. 12, No. 4,
1179-1199.
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Clifton, C., Kantarcioglu, M., Lin, X., Vaidya, J. and Zhu,
Y. (2002). Tools for Privacy Preserving Distributed Data Mining.
SIGKDD Explorations. Vol.4, No.2, 28-34.
Submitted
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Sun, Z, Kuscek, T. and Zhu, Y. Statistical Calibration of qRT-PCR, Microarray and RNA-Seq Gene Expression Data with Measurement Error Models. Journal of American Statistical Association. Under Review.
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Liu, S. and Zhu, Y. From Good to Great: Nonlinear Improvement of Healthcare Service.
Journal of Service Research Under revision.
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Guo, Y. Zhu, Y., Proctor, R. and Salvendy, G.
Axiomatic Usability Evaluation Method for Complex Information Appliances. Under Review.
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Kwon, B. C., Yi, J. S., and Zhu, Y.
ReadingMate: A New Device for Enhancing Reading While Running on a Treadmill. Under Revision.
Book or Chapter
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Sun, Z., Wu, H., Qin, Z., and Zhu, Y. (2012).
Model-Based Methods for Transcript Expression Level Quantification in RNA-Seq in Advances in Statistical Bioinformatics: Models and Integrative Inference for High-Throughput Data,edited by
Do, K-A., Qin, S. and Vannucci, M. Cambridge University Press. To Appear.
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Vaidya, J., Clifton, C. and Zhu, M. (2005).
Privacy Preserving Data Mining. Advances in Information Security
Vol.19. Springer-Verlag.
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Zhu, Y. (2008). Product Array Deisgns in Encyclopedia
of Statistics in Quality and Reliability edited by Ruggeri, F,
Kenett, R. S. and faltin, F. W. Wiley
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