Research
Profile
Min
Zhang
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Publications1. Liu
D, Yang Z, Chandler K, Oshodi A, Zhang T, Ma J, Kusumanchi
P, Huda N, Heathers L, Perez K, Tyler K, Ross R, Jiang Y, Zhang D*, Zhang M*,
Liangpunsakul S*. (* co-corresponding authors,
2021). Serum metabolomic analysis reveals several novel biomarkers in
association with excessive alcohol use – an exploratory study.
Translational Research. (DOI: 10.1016/j.trsl.2021.10.008). 2.
Liu Z, Johnson T, Shao W, Zhang M, Zhang J,
Huang K. (2021). Optimal transport- and kernel-based early detection of mild
cognitive impairment patients based on magnetic resonance and positron
emission tomography images. Alzheimer’s Research & Therapy. (DOI: https://doi.org/10.21203/rs.3.rs-246076/v1). 3.
Cobb JN, Chen C, Shi Y, Maron L, Liu D, Rutzke M, Greenberg A, Craft E, Shaff
J, Akther K, Wang S, Kochian
L, Zhang D, Zhang M*, McCouch S*.
(*co-corresponding authors, 2021) Genetic architecture of root and shoot ionomes in rice (Oryza
sativa L.). Theoretical and Applied
Genetics. 134: 2613-2637. 4.
Liu H, Han L, Kang G, Zhang M, Chen R.
(2021). Editorial: Statistical methods, computing and resources for
genome-wide association studies. Frontiers
in Genetics. 12:714894. 5.
Liu Z, Shao W, Zhang J, Zhang M, Huang K.
(2021). Transfer learning via optimal transportation for integrative cancer patient
stratification. International Joint
Conference on Artificial Intelligence (IJCAI-21). 6.
Wang X, Ren M, Liu D, Zhang D, Zhang C,
Lang Z, Macho AP*, Zhang M*, Zhu JK*. (*co-corresponding authors, 2020).
Large-scale eQTL identification in Arabidopsis reveals
novel candidate regulators of immune responses and other processes. Journal of Integrative Plant Biology.
DOI: 10.1111/jipb.12930. 62(10): 1469-1484. 7.
Pungpapong V,
Zhang M, Zhang D. (2020). Integrating biological knowledge into case-control
analysis via iterated conditional modes/median algorithm. Journal of Computational Biology.
PMID: 31692371. DOI: 10.1089/cmb.2019.0319. 27(7):
1171-1179. 8.
Zhang D, Zhang M. (2019). Advanced
Statistical Methods for NMR-Based Metabolomics. Methods in Molecular Biology. 2037: 471-482. PMID: 31463861. DOI:
10.1007/978-1-4939-9690-2_26. 9.
Chen C, Zhang D*, Hazbun T*, Zhang M*.
(*co-corresponding authors, 2019). Inferring gene regulatory networks from a
population of yeast segregants. Scientific
Reports. 9(1):1197. 10.
Zhao Y, Abebe A, Qi L, Zhang M, and Zhang
X. (2019). New advances in biostatistics (Editorial). Journal of Probability and Statistics, Article ID 1352310. 11.
Chen C, Ren M, Zhang M, and Zhang D.
(2018). A two-stage penalized least squares method for constructing large
systems of structural equations. Journal
of Machine Learning Research. 19. 12.
Zhang M. (2018). Book Review: “Design,
Analysis, and Interpretation of Genome-Wide Association Scans. Biometrics. 74: 775-776. 13.
Pauli D, Ziegler G, Ren M, Jenks M,
Hunsaker D, Zhang M, Baxter I, and Gore M. (2018). Multivariate analysis of
the cotton seed ionome reveals integrated genetic
signatures of abiotic stress response. G3:
Genes, Genomes, Genetics. 8(4): 1147-1160. 14.
Chen C, Gowda N, Zhu J, Deng L, Gu H, Chiorean G, Zaid M, Harrison M, Zhang D, Zhang M*, and Daniel Raftery*. (*
co-corresponding authors, 2017). Altered metabolite levels and correlations
in patients with colorectal cancer and polyps detected using seemingly
unrelated regression analysis. Metabolomics.
13:125. DOI: 10.1007/s11306-017-1265-0. 15.
Zhang M, Hua L, Zhai
W, Zhao Y. (2017). Novel computational approaches and applications in cancer
research. BioMed Research International.
Editorial. Volume 2017, Article ID 9509280. https://doi.org/10.1155/2017/9509280. 16.
Park J, Salmi ML, Wan Salim WWA, Rademacher
A, Wickizer B, Schooley A, Benton J, Cantero A, Argote P, Ren M,
Zhang M, Porterfield DM, Ricco AJ, Roux SJ, and Rickus
JL. (2017). An autonomous lab on a chip for space flight calibration of
gravity-induced transcellular calcium polarization in single-cell fern
spores. Lab on a Chip.
17:1095-1103. 17.
Guan L, Wang Q, Wang L, Wu B, Chen Y, Liu
F, Ye F, Zhang T, Li K, Yan B, Lu C, Su L, Jin G, Wang H, Tian H, Wang L, Chen Z, Wang Y, Chen J,
Yuan Y, Cong W, Zheng J, Wang J, Xu X, Liu H, Xiao W, Han C, Zhang Y, Jia F, Qiao X, Genetic REsearch on schizophreniA neTwork-China and
Netherland (GREAT-CN), Zhang D, and
Zhang M*, and Ma H* (*co-corresponding authors, 2016). Common variants on
17q25 and gene-gene interactions conferring risk of schizophrenia in Han
Chinese population and regulating gene expressions in human brain. Molecular Psychiatry. 21(9):
1244-1250. 18.
Shi C, Zheng Z, Wang Q, Wang C, Zhang D,
Zhang M*, Chan P*, Wang XM* (*co-corresponding authors, 2016). Exploring the
effects of genetic variants on clinical profiles of Parkinson’s disease
assessed by the Unified Parkinson’s disease rating scale and the Hoehn-Yahr score. PLos One. 11(6):
e0155758. 19.
Neumann E, Mehboob H, Ramirez J, Mirkov S, Zhang M, and Liu W. (2016). Age-dependent
hepatic UDP-glucuronosyltransferase gene expression and activity in children. Frontiers
in Pharmacology. 7: Article 437. 20.
Reyes-Fernandez P, Replogle
RA, Wang L, Zhang M, Fleet JC. (2016). Novel genetic loci control calcium
absorption and femur bone mass as well as their response to low calcium
intake in male BXD recombinant inbred mice. Journal of Bone and Mineral Research. 31(5): 994-1002. 21.
Fleet JC, Replogle RA, Reyes-Fernandez P, Wang
L, Zhang M, Clinkenbeard EL and White KE. (2016) Gene-by-Diet Interactions Affect Serum 1,25
dihydroxyvitamin D Levels in Male BXD Recombinant
Inbred Mice. Endocrinology. 157(2):
470-481. 22.
Pungpapong
V, Zhang M, Zhang D. (2015). Selecting massive variables using an iterated
conditional modes / medians algorithm. Electronic
Journal of Statistics. 9(1): 1243-1266. 23. Lin
Y, Zhang M, Zhang D. (2015). Generalized orthogonal-components regression for
high-dimensional generalized linear models. Computational
Statistics and Data Analysis.
88: 119-127. 24. Chen C, Deng L, Wei S, Gowda N, Gu
H, Chiorean EG, Zaid MA, Harrison ML, Pekny JF, Loehrer PJ, Zhang D, Zhang
M*, and Raftery D*. (*co-corresponding authors, 2015) Exploring metabolic
profile differences between colorectal polyp patients and controls using
seemingly unrelated regression. Journal
of Proteome Research. 14(6): 2492-2499. 25. Eisenberg T, Eisenberg M, Wells MT,
Zhang M. (2015). Addressing the zero problem: regression models for outcomes
with a large proportion of zeros, with an application to trial outcomes. Journal of Empirical Legal Studies.
12(1): 161-186. 26. Wang L, Athinarayanan
S, Jiang G, Chalasani N, Zhang M, Liu W. (2015).
Fatty acid desaturase 1 (FADS1) gene polymorphisms control human hepatic
lipid composition. Hepatology. 61:
119-128. 27. Pinson SRM, Tarpley L, Yan W, Yeater K, Lahner B, Yakubova E, HuangX, Zhang M, Guerinot ML, Salt DE. (2015). Worldwide genetic diversity
for mineral element concentrations in rice grain. Crop Science. 55: 1-18. 28. Xue X, Shi Z, Wang W, Yu X, Feng P,
Zhang M, Wang X, Xu J. (2015). Huqi San-evoked rat
colonic anion secretion through increasing CFTR expression. Evidence-Based Complementary and
Alternative Medicine. Article ID 301640. 29. Zhang M, Pinson SRM, Tarpley L,
Huang B, Lahner B, Yakubova
E, Baxter I, Guerinot ML, Salt DE. (2014). Mapping
and validation of quantitative trait loci associated with concentration of 16
elements in unmilled rice grain. Theoretical and Applied Genetics.
127(1): 137-165. 30. Li C, Wei R, Johnes-Hall
Y, Vittal R, Zhang M, and Liu W. (2014). Epidermal
growth factor receptor (EGFR) pathway genes and interstitial lung disease: An
association study. Scientific Reports.
4: 4893. 31. Wei R, Li C, Zhang M, Jones YL,
Myers JL, Noth I, Liu W. (2014). Association
between MUC5 B and TERT polymorphisms and different interstitial lung disease
phenotypes. Translational Research.
doi: 10.1016/j.trsl.2013.12.006. 32. Athinarayanan S, Wei R, Zhang M, Bai S, Traber
MG, Yates K, Cummings OW, Molleston J, Liu W and Chalasani N. (2014). Genetic polymorphism of cytochrome
P450 4F2, vitamin E level and histological responses in adults and children
with nonalcoholic fatty liver disease who participated in PIVENS and TONIC
clinical trials. PLoS One. 9(4): e95366. 33. Replogle RA, Li Q, Wang L, Zhang M, Fleet
JC. (2014). Gene-by-diet interaction influence calcium absorption and bone
density in mice. Journal of Bone and
Mineral Research, 29(3): 657-665. 34. Gamazon ER, Innocenti
F, Wei R, Wang L, Zhang M, Mirkov S, Ramirez R,
Huang RS, Cox NJ, Ratain MJ, Liu W. (2013). A
genome-wide integrative study of microRNAs in human liver. BMC Genomics, 14: 395. 35. Li H, Wang YJ, Hua L, Yang YT, Zhang
M, Zhang D, Wang C, Xu ZQ. (2013). Lack of association between dendritic cell
nuclear protein-1 gene and major depressive disorder in the Han Chinese
population. Progress in
Neuro-Psychopharmacology & Biological Psychiatry. 45:7-10. 36. Pungpapong V, Muir WM, Li X, Zhang D, and
Zhang M. (2012). A fast and efficient approach for genomic selection with
high density markers. G3: Genes,
Genomes, Genetics, 2(10): 1179-84. 37. Isailovic D, Plasencia
MD, Gaye MM, Stokes ST, Kurulugama RT, Pungpapong V, Zhang M, Kyselova
Z, Goldman R, Mechref Y, Novotny MV, and Clemmer
DE. (2012). Delineating diseases by IMS-MS profiling of serum N-linked
glycans. Journal of Proteome Research,
11: 576-585. 38. Pungpapong V, Wang L, Lin Y, Zhang D, and
Zhang M. (2011). Genome-wide association analysis of GAW17 data using an
empirical Bayes variable selection. BMC
Proceedings, 5 (Suppl 9): S4. 39. Wang L, Pungpapong
V, Lin Y, Zhang M, and Zhang D. (2011). Genome-wide case-control study in
GAW17 using coalesced rare variants. BMC
Proceedings, 5 (Suppl 9): S110. 40. Li X, Zhu C, Lin Z, Wu Y, Zhang D,
Ma J, Song W, Bai G, Muehlbauer G, Scanlon M, Zhang
M, and Yu J. (2011). Chromosome size in diploid eukaryotic species centers on
the average length with a conserved boundary. Molecular Biology and
Evolution, 28(6): 1901-1911. 41. Zhang M, Zhang D, and Wells MT.
(2010). Generalized thresholding estimators for high-dimensional location
parameters. Statistica Sinica, 20:
911-926. 42. Zhang M. (2010). Bayesian
classification method for QTL mapping. Bayesian
Modeling in Bioinformatics, edited by Dey, Ghosh, and Mallick. 43. Zhang M, and Cowen M. (2010).
Statistical based analysis and modeling. Handbook
of Healthcare Delivery Systems, edited by Yih. 44. Buescher E, Achberger
T, Amusan I, Giannini A, Ochsenfeld
C, Rus A, Lahner B, Hoekenga
O, Yakubova E, Harper JF, Guerinot
ML, Zhang M, Salt DE, Baxter IR. (2010). Natural genetic variation in
selected populations of Arabidopsis thaliana is associated with ionomic differences. PLoS ONE, 5(6): e11081. 45. Sari Y, Zhang M, and Mechref, Y. (2010). Differential expression of proteins
in fetal brains of alcohol-treated prenatally C57BL/6 mice: a proteomic
investigation. Electrophoresis,
31(3): 483-496. 46. Hammoud ZT, Mechref
Y, Hussein A, Bekesova S, Zhang M, Kesler KA, and
Novotny MV. (2010). Comparative glycomic profiling
in esophageal adenocarcinoma. The
Journal of Thoracic and Cardiovascular Surgery. 139 (5): 1216-1223. 47. Zhang M, Lin Y, Wang L, Pungpapong V, Fleet JC, and Zhang D. (2009). Case-control
genome-wide association studies of rheumatoid arthritis from GAW16 using
POCRE-LDA. BMC Proceedings, Suppl
7: S17. 48. Lin Y, Zhang M, Wang L, Pungpapong V, Fleet JC, and Zhang D. (2009). Simultaneous
genome-wide association studies of anti-CCP in rheumatoid arthritis using
penalized orthogonal-components regression. BMC Proceedings, Suppl 7: S20. 49. Jedicka SS, Dadarlat
M, Hassell T, Lin Y, Zhang M, Irazoqui P, Rickus J. (2009). Calibration of neurotransmitter release
from neural cells for therapeutic implants. International Journal of Neural Systems, 19: 197-212. 50. Zhang D, Lin Y, and Zhang M. (2009).
Penalized
orthogonal-components regression for large p small n data. Electronic Journal of Statistics, 3:
781-796. 51. Zeng L, Salvendy
G, and Zhang M. (2009). Factor structure of web site creativity. Computers in Human Behavior, 25:
568-577. 52. Mechref Y, Hussein A., Bekesova
S, Punpapong V, Zhang M, Dobrolecki
LE, Hickey RJ, Hammoud ZT, Novotny MV. (2009). Quantitative serum glycomics of esophageal adenocarcinoma and other
esophageal disease onsets. Journal of
Proteome Research, 8: 2656-2666. 53. Zhang M, Zhang D, and Wells MT.
(2008). Variable selection with large p small n regression models: mapping
QTL with epistasis. BMC Bioinformatics,
9:251. 54. Zhang D, Huang X, Regnier F, and Zhang M. (2008). Two-dimensional
correlation optimized warping algorithm for aligning GC´GC-MS data. Analytical Chemistry,
80(8): 2664-2671. 55. Zhang D, and Zhang M. (2007).
Bayesian profiling of molecular signatures to predict event times. Theoretical Biology and Medical Modelling,
4: 3. 56. Zhang, M, Strawderman,
R., Cowen, M., and Wells, M.T. (2006). Bayesian Inference for a two-part
hierarchical model: an application to profiling providers in managed health
care. Journal of the American
Statistical Association, 101: 934-945. 57. Zhang D, Zhang M, and Wells MT.
(2006). Multiplicative background correction for spotted microarrays to
improve reproducibility. Genetical
Research, 87: 195-206. 58. Zhang M, Montooth
KL, Wells MT, Clark AG, and Zhang D. (2005). Mapping multiple quantitative
trait loci by Bayesian classification. Genetics,
169: 2305-2318. 59. Zhang M, Wang X, Zhang D, Xu G, Dong
H, Yu Y, and Han J. (2005). Orphanin FQ antagonizes
the inhibition of Ca2+ currents induced by m-opioid receptors. Journal
of Molecular Neuroscience, 25: 21-28. 60. Dong H, Wang L, Zhang M, and Han J.
(2005). Decreased dynorphin A (1-17) in the spinal cord of spastic rats after
compressive injury. Brain Research Bulletin,
67: 189-195. 61. The Complex Trait Consortium.
(2004). The collaborative cross: a community resource for the genetic
analysis of complex traits. Nature
Genetics, 36(11): 1133-1137. 62. Zhang M, Sun Q, Wan Y, Yao L, Yu Y,
and Han J. (1998). OFQ reverses the opioid receptor-mediated depression of
calcium current in rat dorsal root ganglion neurons. NeuroReport, 9: 2095-2098.
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