Publications of Jun Xie

  1. Chuanhai Liu and Jun Xie, 2013, "Probabilistic Inference for Multiple Testing", International Journal of Approximate Reasoning, DOI:10.1016/j.ijar.2013.09.017.

  2. Jingyi Zhu and Jun Xie, 2013, "Nonparametric Variable Selection for Predictive Models and Subpopulations in Clinical Trials", Journal of Biopharmaceutical Statistics, in press.

  3. Hongzi Liang, Leo Studach, Ronald Hullinger, Jun Xie, and Ourania Andrisani, 2013, "Down-regulation of RE-1 Silencing Transcription Factor (REST) in advanced prostate cancer by hypoxia-induced miR-106b~25", Experimental Cell Research, in press.

  4. Chuanhai Liu and Jun Xie, 2013, "Large Scale Two Sample Multinomial Inferences and Its Applications in Genome Wide Association Studies", International Journal of Approximate Reasoning, DOI:10.1016/j.ijar.2013.04.010.

  5. Qiu, X., W. Sun, C. McDonnell, H. Li, L.D., Steele, J. Wu, J. Xie, W. Muir, and B. R. Pittendrigh, 2012, "Genome-wide analysis of genes associated with moderate and high DDT resistance in Drosophila melanogaster", Pest Management Science, DOI: 10.1002/ps.3454.

  6. Lingmin Zeng and Jun Xie, 2012, "Group Variable Selection via SCAD-L2", Statistics: A Journal of Theoretical and Applied Statistics, DOI:10.1080/02331888.2012.719513.

  7. Jun Xie, Hui Quan and Ji Zhang, 2012, "Blinded Assessment of Treatment Effects for Survival Endpoint in an Ongoing Trial", Pharmaceutical Statistics, DOI:10.1002/pst.535.

  8. Lingmin Zeng and Jun Xie, 2012, "Group variable selection methods for data with dependent structures", Journal of Statistical Computation and Simulation, 82(1), 95-106.

  9. Lijie Sun, Hong-Mei Li, Manfredo J. Seufferheld, Kent Walters, Venu Margam, Amber Jannasch, Naomi Diaz, Catherine P. Riley, Weilin Sun, Yueh-Feng Li, William M. Muir, Jun Xie, Jing Wu, Fan Zhang, Jake Y. Chen, Eric L. Barker, Jiri Adamec, and Barry R. Pittendrigh, 2011, "Systems-scale Analysis Reveals Pathways Involved in Cellular Response to Methamphetamine", PLoS ONE, 6(4): e18215. doi:10.1371/journal.pone.0018215.

  10. Chien Hsun Huang, Lei Cong, Jun Xie, Bo Qiao, Shaw-Hwa Lo and Tian Zheng, 2009, "Rheumatoid Arthritis-Associated Gene-Gene Interaction Network for Rheumatoid Arthritis Candidate Genes", BMC Proceedings, 3(Suppl 7):S75.

  11. Bo Qiao, Chien Hsun Huang, Lei Cong, Jun Xie, Shaw-Hwa Lo and Tian Zheng, 2009, "Genome-Wide Gene-Based Analysis of Rheumatoid Arthritis-Associated Interaction with PTPN22 and HLA-DRB1", BMC Proceedings, 3(Suppl 7):S132.

  12. Lingmin Zeng, Jing Wu, and Jun Xie, 2008, "Statistical methods in integrative analysis for gene regulatory modules", Statistical Applications in Genetics and Molecular Biology, Vol. 7(1), Article 28.

  13. Hong-Mei Li, Lijie Sun, Omprakash Mittapalli, William M. Muir, Jun Xie, Jing Wu, Brandi Schemerhorn, Weilin Sun, Larry Murdock, and Barry R. Pittendrigh, 2008, "Transcriptional Signatures in Response to Wheat Germ Agglutinin and Starvation in Drosophila melanogaster Larval Midgut", Insect Molecular Biology, doi:10.1111/j.1365-2583.2008.00844.x.

  14. Hong-Mei Li, Grzegorz Buczkowski, Omprakash Mittapalli, Jun Xie, Jing Wu, Rick Westerman, Brandy Schemerhorn, Larry L. Murdock, and Barry R. Pittendrigh, 2008, "Transcriptomic profiles of Drosophila melanogaster third instar larval midgut and responses to oxidative stress", Insect Molecular Biology, Vol. 17(4), 325-339.

  15. Junyu Li, Shaji Abraham, Liang Cheng, Frank A.Witzmann, Michael Koch, Jun Xie, Munazzah Rahman, and Sulma I. Mohammed, 2008, "Proteomic-Based Approach for Biomarkers Discovery in Early Detection of Invasive Urothelial Carcinoma", Proteomics - Clinical Applications, Vol. 2, 78-89.

  16. Jing Wu and Jun Xie, 2008, "Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Models", Journal of Computational Biology, Vol. 15, No. 3, 279-290.

  17. Elisabetta Antuofermo, Margaret A. Miller, Salvatore Pirino, Jun Xie, Sunil Badve, and Sulma I. Mohammed, 2007, "Spontaneous mammary intraepithelial lesions in dogs - a model for breast cancer", Cancer Epidemiology, Biomarkers & Prevention, Vol. 16, 2247-2256.

  18. Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie and Sun Kim, 2007, "dPattern: Transcription Factor Binding Site (TFBS) Discovery in Human Genome using a Discriminative Pattern Analysis", Bioinformatics, doi:10.1093/bioinformatics/btm288.

  19. Patricia C. Abad, Jason Lewis, I. Saira Mian, Sunil Badve, Jun Xie, and Sophie A. Lelivre, 2007 "Influence of NuMA on higher order chromatin structure in human mammary epithelium", Molecular Biology of the Cell, Vol 18, 348-361.

  20. Chaofeng Liu, Wei Shen and Jun Xie, 2007, "Nonparametric Empirical Bayes Method for Comparison of Treatment Effects with Application to Stress Urinary Incontinence Data", Pharmaceutical Statistics, doi:10.1002/pst.264.

  21. Chaofeng Liu, Ying Zhang, Jun Xie, 2007, "Weighted Nonparametric Maximum Likelihood Estimate of a Mixing Distribution in Nonrandomized Clinical Trials", Statistics in Medicine, doi:10.1002/sim.2914.

  22. Nak-Kyeong Kim and Jun Xie, 2006, "Protein Multiple Alignment Incorporating Primary and Secondary Sequence Information", Journal of Computational Biology, Vol. 13, No. 10, 1735-1748.

  23. Minghui Zhang, Rado Gazo, Daniel L. Cassens, and Jun Xie, 2006, "Moisture distribution in a dried red oak lumber package stored in a high humidity environment", Forest Products Journal, Vol. 56, No. 4, 75-80.

  24. Chuancai Wang, Jun Xie, and Bruce A. Craig, 2005, "Context Dependent Models for Discovery of Transcription Factor Binding Sites", Statistical Methodology, Vol 3, 55-68.

  25. Jun Xie and Nak-Kyeong Kim, 2005, "Bayesian Models and Markov Chain Monte Carlo Methods for Protein Motifs with the Secondary Characteristics", Journal of Computational Biology, Vol. 12, No. 7, 952-970.

  26. Jun Xie and Chaofeng Liu, 2005, "Adjusted Kaplan-Meier Estimator and Log-rank Test with Inverse Probability of Treatment Weighting for Survival Data", Statistics in Medicine, Vol. 24, No. 20, 3089-3110.

  27. Abdullahi Ameen, Changlu Wang, Walid Kaakeh, Gary W. Bennett, J. Edward King, Laura L. Karr and Jun Xie, 2005, "Residual Activity and Population Effects of Noviflumuron for German Cockroach (Dictyoptera: Blattellidae) Control", Journal of Economic Entomology, Vol. 98, No. 3, 899-905.

  28. Jun Xie, Ker-Chau Li, and Minou Bina, 2004, "A Bayesian Searching via Entropy Filtering", Journal of the American Statistical Association, Vol. 99, No. 466, 409-420.

  29. Jun Xie and Peter M. Bentler, 2003, "Covariance Structure Models for Gene Expression Microarray Data", Structural Equation Modeling, Vol. 10, 566-582.

  30. Guanglu Gong, Minping Qian, and Jun Xie, 2001, "Reversible algorithm of simulating multivariate densities with multi-hump", Science in China Series A, Vol. 44, No. 3, 357-364.

  31. Peter M. Bentler and Jun Xie, 2000, "Corrections to Test Statistics in Principal Hessian Directions", Statistics & Probability Letters, Vol. 47, 381-389.

  32. O. Catoni, Dayue Chen, and Jun Xie, 2000, "The reduction method, the loop erased exit path, and the meta-stability of the biased majority vote process", Stochastic Processes and Their Applications, Vol. 86, 231-261.