MBA:
Model-Based Assignment


A software for inferential assignment of protein
backbone nuclear magnetic resonances

 

Home

Installation

Input files

Execution

Output

Convergence

Installation and setup:

The source code for MBA can be downloaded here. Install the package in a directory, say 


	/home/jefferson/local/MBA
Specify the MBA environment in your .cshrc file. In the example above you'll add the following lines to the file: 

	setenv MBAHOME    /home/jefferson/local/MBA
	alias runmba      $MBAHOME/bin/runmba

Specify the class path for MBA in the command file. In the example above, the file
/home/jefferson/local/MBA/bin/runmba
will contain the following line. The part that should be edited is shown in red. 


nohup java -Xmx1000MB -classpath lib/concurrent.jar:lib/Jama-1.0.1.jar:lib/or124.jar:/homes/jv/MBA3 Main $*