2007 Publications

• A. I. Nesvizhskii, O. Vitek and R. Aebersold. 2007. Analysis and validation of proteomic data generated by tandem mass spectrometry Nature Methods. 4, 787 - 797. Published online: 27 September 2007; | doi:10.1038/nmeth1088.
• J.M. Ordway, M.A. Budiman, Y. Korshunova, R.K. Maloney, J.A. Bedell, R.W. Citek, B. Bacher, S. Peterson, T. Rohlfing, J. Hall, R. Brown, N. Lakey, R.W. Doerge, R.A. Martienssen, J. Leon, J.D. McPherson, and J.A. Jeddeloh. 2007. Identification of novel high-frequency DNA methylation changes in breast cancer. Public Library of Science (PLoS) ONE. 12:1314.
• H.-T. Leung, L. An, J. Tseng-Crank, E. Kim, E.L. Harness, Y. Zhou, J. Kitamoto, G. Li, R.W. Doerge, and W.L. Pak. 2007. Phototransduction in Drosophila: Use of microarrays in cloning genes identified by chemically induced mutations causing ERG defects. In S.J. Fliesler and O.G.Kisselev (eds.), Signal Transduction in the Retina, Taylor and Francis/CRC Press, pp. 195-217.
• J. Zhao, J. Wang, L. An, R.W. Doerge, Z.J. Chen, C. Grau, J. Meng, and T. Osborn. 2007. Transcriptional changes of Brassica napus in response to necrotrophic fungus Sclerotinia scletotiorum revealed by Arabidopsis oligo-gene microarrays. Planta. 2007 Jul 31; 17665211.
• H. van Leeuwen, D.J. Kliebenstein, M.A.L. West, K. Kim, R. van Poecke, F. Katagiri, R.W. Michelmore, R.W. Doerge, D.A. St.Clair. 2007. Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid. The Plant Cell. 19(7):2099-2110.
• M. Vaughn, M. Tanurdzic, Z. Lippman, H. Jiang, R. Carrasquillo, V. Colot, R.W. Doerge and R.A. Martienssen. Epigenetic natural variation in Arabidopsis thaliana Public Library of Science (PLoS) Biology. 5(7): e174. 2007.
• R.W. Doerge. 2007. Statistical Advances in Functional Genomics. R. Varshney and R. Tuberosa (eds.), Genomic Assisted Crop Improvement: Vol 1: Genomics Approaches and Platforms, 315-332. Springer-Verlag.
• M.A.L. West, K. Kim, D.J. Kliebenstein, H. van Leeuwen, R.W. Michelmore, R.W. Doerge, D.A. St.Clair. 2007. Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript Level Variation in Arabidopsis. Genetics. 175: 1441-1450.