Ph.D. Dissertations: 1998 to Present


Dissertation TitlePh.D. StudentAdvisor(s)Graduated
A Framework for the Statistical Analysis of Mass Spectrometry Imaging ExperimentsKylie BemisHyonho Chun, Olga VitekDec 2016
Bayesian Methods for Causal Inference of Cell Signal TransductionRobert NessHyonho ChunDec 2016
Group Tranformation and Identification with Kernel Methods and Big Data Mixed Logistic RegressionChao PanMichael ZhuDec 2016
Some Functional Regression Models in the Frame Work of Reproducing Kernel Hilbert SpaceSimeng QuXiao WangDec 2016
Divide and Recombined for Large Complex Data: Nonparametric-Regression Modelling of Spatial and Seasonal-Temporal Time SeriesXiaosu TongWilliam S. ClevelandDec 2016
Some Constructive Suggestions on False ModelsPiyas ChakrabortyHao Zhang, Jayanta K. GhoshAug 2016
Model-Free Variable Screening, Sparse Regression Analysis and Other Applications with Optimal TransformationsQiming HuangMichael ZhuAug 2016
High Dimensional Inference for Semiparametric ModelsZhuqing YuGuang ChengAug 2016
The Design and Statistical Analysis of Single-Cell RNA-Sequencing ExperimentsFaye ZhengRebecca DoergeAug 2016
A Flexible Framework for Statistical Design and Analysis of Quantitative Mass Spectrometry-Based Proteomic ExperimentsMeena ChoiHyonho Chun, Olga VitekMay 2016
Assessing Inter-rater Agreement for Compositional DataNingning ChenBruce A. CraigDec 2015
On Methods for Variable Selection under Single Index Model and DNA Methylation Status CallingLongjie ChengMichael ZhuDec 2015
Calcium Requirement Distribution via Bone Growth ModelingMichael LawlorGeorge P. McCabeDec 2015
Malliavin Calculus in the Canonical Levy Process: White Noise Theory and Financial ApplicationsRolando NavarroFrederi G. ViensDec 2015
Applications of Short-Time Asymptotic Methods to Option Pricing and Change-Point Detection for Levy ProcessesSveinn OlafssonJose Figueroa-LopezAug 2015
Inference Using Multi-Level Genomic Features Sets and Models in RNA-Seq ExperimentsJeremiah RoundsRebecca DoergeAug 2015
Realized Kernal Estimation of Integrated Volatility Using High Feequency with Random Trading TimeXiaoguang WangMichael Levine, Frank (Jian) ZouAug 2015
Divide and Recombine For Large Complex Data: The Subset Likelihood Modeling Approach to RecombinationPhilip GautierWilliam S. ClevelandMay 2015
Uncertainty Quantification and Calibration of Physical ModelsXian HeHao ZhangMay 2015
A Pure-Jump Market-Making Model for High-Frequency TradingChi Wai (Baron) LawFrederi G. ViensMay 2015
Stability of Machine Leaving AlgorithmsWei SunGuang ChengMay 2015
Modeling Spatial Covariance FunctionsInKyung ChoiHao ZhangDec 2014
On the Occurences of Motifs in Recursive Trees With Applications to Random StructuresMohan GopaladesikanMark Daniel Ward, Hosam MahmoudDec 2014
Spatial Marked Point Processes - Models and InferencesYen-Ning HuangHao Zhang, Tonglin ZhangDec 2014
Nonparametric Variable Selection and Dimension Reduction Methods and Their Applications in PharmacogenomicsZhu JingyiJun XieDec 2014
The Tessera D&R Computational Environment:Designed Experiments For R-Hadoop Performance and Bitcoin AnalysisJianfu LiWilliam S. ClevelandDec 2014
Identification of Genomic Factors Using Family Based Association StudiesLibo WangDabao Zhang, Min ZhangDec 2014
Modeling and Inference in Functional Data AnalysisShuang HeXiao Wang, Chuanhai LiuAug 2014
Some Theoretical and Methodological Aspects of Multiple Testing, Model Selection and Related AreasJyotishka DattaJayanta K. Ghosh, Michael ZhuMay 2014
A Study of the Tenability of Polya Urn SchemesAllison DavidsonMark Daniel WardMay 2014
Doubly Separable Models and Distributed Parameter EstimationHyokun YunS. V. N. VishwanathanMay 2014
Disk Diffusion Breakpoint Determination Using a Bayesian Nonparametric Varition of the Errors-in-Variables ModelGlen DePalmaBruce A. CraigDec 2013
Non-parametric Spatial ModelsCheng LiuHao ZhangDec 2013
Statistical Estimation of Jump-Diffusion Models via Optimal ThresholdingJeffrey NisenJose Figueroa-LopezDec 2013
Statistical Models for Gene and Transcripts Quantification and Identification Using RNA-SeqHan WuMichael ZhuDec 2013
Estimation of Variation for High-Throughput Molecular Biological Experiments with Small Sample SizeDanni YuOlga VitekDec 2013
Cost effective and accurate protein quantification for large-scale targeted proteomicsChing-Yun (Veavi) ChangOlga VitekAug 2013
Optimal Low Rank Model for Multivariate Spatial DataJuan HuHao ZhangAug 2013
A Framework for Practical Bayesian Analysis of High-Dimiensional Genomic DataSanvesh SrivastavaRebecca W. DoergeAug 2013
New Methods of Estimation of Long-Memory Models with an Application in ClimatologyLuis BarbozaFrederi G. Viens, Bo LiDec 2012
Annotation-Informed Integration of 'omic Data in Next-Generation SequencingDouglas BaumannRebecca W. DoergeDec 2012
General Method for Adaptive Control and Estimation of False Discovery RateXiongzhi ChenRebecca DoergeDec 2012
Statistical Protein Quantification and Prioritization in Label-Free Shotgun LC-MS/MS ProteomicsTimothy CloughOlga VitekMay 2012
Model Selection: Bayes and Frequentist PerspectiveRitabrata DuttaJayanta K. Ghosh, Guang ChengMay 2012
Empirical Bayes Variable Selection in High-Dimensional RegressionVitara PungpapongDabao Zhang, Min ZhangMay 2012
LASSO and General L_1 Regularized Regression under Linear Equality and InequalityTianhong HeMichael ZhuDec 2011
Supervised Dimension Reduction for High-Dimensional Generalized Linear ModelsYanzhu LinDabao Zhang, Min ZhangDec 2011
A Multivariate Spatial Modeling Approach Using Semi-parametric Covariance FunctionsYong WangHao ZhangDec 2011
The Detection of Clusters with Spatial HeterogeneityZuoyi ZhangTonglin Zhang, Chuanhai LiuDec 2011
Inferential Models and Restricted SpacesDuncan LeafChuanhai LiuAug 2011
Bayesian Linkage Analysis for AutotetraploidsEunjung LimBruce A CraigAug 2011
Bayesian Nonparametric Density Estimation and Sufficient Dimension Reduction in Survival AnalysisShraddha MehtaBruce A Craig, Jayanta K. GhoshAug 2011
Divide and Recombine (D&R) for the Analysis of Large and Complex Data Sets with Application to VOIPJin XiaWilliam S. Cleveland, Mark Daniel WardAug 2011
Selecting Subsets of Traits for Quantitative Trait Loci AnalysisTilman AchbergerRebecca W. DoergeMay 2011
Computing Environment for the Statistical Analysis of Large and Complex DataSaptarshi GuhaWilliam S. ClevelandDec 2010
Population Monte Carlo Methods with Applications in Bayesian StatisticsAndrew LewandowskiChuanhai LiuDec 2010
Building Statistical Models for Financial Asset Returns: New Stochastic Volatility ModelsYanhui MiChuanhai LiuDec 2010
Statistical Inference with Weak BeliefsJianchun ZhangChuanhai LiuDec 2010
Model-Based Identification and Quantification of Metabolites in 1H NMR SpectraCheng ZhengOlga VitekDec 2010
Statistical Design and Analysis of Next-Generation Sequencing DataPaul Livermore AuerRebecca W. DoergeAug 2010
Incorporating Genome Annotation in the Statistical Analysis of Genomic & Epigenomic Tiling Array DataGayla OlbrichtRebecca W. Doerge, Bruce A. CraigAug 2010
Reverse Engineering Gene Networks Using Genomic Time-Course DataAndrea RauRebecca W. DoergeAug 2010
Local Regression Models: Advancements, Applications and New MethodsRyan HafenWilliam S. ClevelandMay 2010
A Theil-type Estimate in Multiple Linear Regression and Developing a New BIC for Detecting Change-pointsGang ShenJayanta K. GhoshMay 2010
Variations and Hurst Index Estimation for Self-Similar ProcessesAlexandra ChronopoulouFrederi G. ViensDec 2009
Joint Modeling of Highly Skewed Data with Excess Zeros Using PopulasJoanne DaggyBruce A. CraigDec 2009
Associating Single Nucleotide Polymorphisms (SNPs) with Binary TraitsAlexander LipkaRebecca W. Doerge, George P. McCabeDec 2009
Estimation of Interatomic Distance Distribution of Protein Molecules from Small Angle Scattering (SAS) ImagesSudeshna PaulBruce A. CraigDec 2009
Improving the EM Algorithm for Maximum Likelihood InferenceYunxiao HeChuanhai LiuAug 2009
Statistical Inference of Protein Structure Using Small-Angle X-Ray Scattering DataLanqing HuaBruce A. CraigAug 2009
Methods for Analyzing Rankings Data and Network Intrusion DetectionPaul KidwellWilliam S. Cleveland, Guy LebanonAug 2009
Fast Nonparametric Estimation of a Mixing Distribution with Application to High-dimensional InferenceRyan MartinJayanta K. Ghosh, Chuanhai LiuAug 2009
Mixed Models in Quantitative Trait Loci and Association Mapping with Bootstrap ThresholdsCherie OchsenfeldRebecca W. Doerge, Kristofer JenningsAug 2009
Local Likelihood Modeling of the Concept Drift PhenomenonYang ZhaoGuy LebanonAug 2009
Some New Approaches in High-Dimensional Variable Selection and RegressionZhongyin (John) DayeMichael ZhuMay 2009
Covariance Adaptation and Regularization in Large-Scale Hypothesis Testing and High-Dimensional Variable SelectinoXinge Jessie JengJayanta K. Ghosh, Jiashun JinMay 2009
Mutual Fund Performance Evaluation Methodology and Local False Discovery Rate ApproachNikita TuzovFrederi G. ViensMay 2009
Group Variable Selection Methods in Analyses of Genomic DataLingmin ZengJun XieMay 2009
Nonparametric Calibration of Two Common Susceptibility Tests Using Interval-Censored Data with Measurement ErrorXiaoli QiBruce A. CraigDec 2008
Dynamic Clustering of Time Series Gene ExpressionLingling AnRebecca W. DoergeAug 2008
Multifractal Functional Sum-Diffesenle Models for Internet TrafficDavid AndersonWilliam S. ClevelandAug 2008
An Additive-Interactive Nonlinear Volatility Model, Estimating and TestingJinguang (Tony) LiMichael (Mihails) LevineAug 2008
Stepwise Model Building Approach for Mixed-Effects Models with Random Scale EffectsLei ShuWilliam S. ClevelandAug 2008
Statistical Methods for Integrating Epigenomic ResultsSuk Young YooRebecca W. DoergeAug 2008
Voice Over the Internet: Statistical Properties and Quality of ServiceHui ChenWilliam S. Cleveland, Bowei XiMay 2008
Algorithm-based statistical modeling with application to multi-sensor tracking data with missing valuesJianying ZhangWilliam S. ClevelandMay 2008
Statistical Methods for Mapping Multiple Complex TraitsRiyan ChengRebecca W. Doerge, Jun XieDec 2007
Stenosis Surveillance for Hemodialysis PatientsZhenqiang (James) LuWilliam S. ClevelandDec 2007
Incorporating Uncertainty into Non-invasive DNA-based Mark-Recapture Population EstimatesShannon KnappBruce A. CraigAug 2007
Some Applications of the prior Bayes ApproachHui XuHerman RubinAug 2007
Estimation of a General Correlation Structure for Latent Class and Latent Variable Models of Multivariate Binary DataHuiping XuBruce A. CraigAug 2007
Evaluating the Nutrional Impact of Maize Varieties Genetically Improved for Protein QualityNilupa GunaratnaGeorge P. McCabeMay 2007
Statistical Issues in Mapping of Genetic Determinants for Expression Level PolymorphismsKyunga KimRebecca W. DoergeMay 2007
Experimental Methods for Model SelectionBenjamin TynerWilliam S. ClevelandMay 2007
Identifying Regulated Genes through the Correlation Structure of Time Dependent MicroarrayMartina BremerRebecca W. DoergeDec 2006
Some Problems in Hazard Estimation with Smoothing SplinesPang DuChong GuAug 2006
Statistical Methods for Using 41Ca to Assess Treatment Effects on Bone TurnoverJoseph NolanGeorge P. McCabeAug 2006
Classification and Variable Selection for High Dimensional Multivariate Binary Data: Adaboost Based New Methods and A Theory for the Plug-in RuleJunyong ParkJayanta K. GhoshAug 2006
Exploring Dirichlet Mixture and Logistic Gaussian Process Priors in Density Estimation, Regression and Sufficient Dimension ReductionSurya TokdarJayanta K. GhoshAug 2006
Statistical issues in protein microarray analysisLianbo YuRebecca W. DoergeMay 2006
On the Estimation of Mixing Distributions: NPMLE and NPMPLELei LiuMichael ZhuDec 2005
Non- and Semi- Parametric Regression with Correlated DataChun HanChong GuAug 2005
Some Topics in Probability and StatisticsBradford JohnsonThomas M. SellkeAug 2005
Bayesian Models and Markov Chain Monte Carlo Methods for Protein Motifs Using Secondary CharacteristicsNak-Kyeong KimJun XieAug 2005
Methods for Missing Values in Dichotomous Response VariablesYun WangGeorge P. McCabeAug 2005
Fourier methods for sufficient dimension reduction in regressionPeng ZengMichael ZhuAug 2005
Non parametric Clustering and mold selection with application in BioinformaticsWenxuan ZhongMichael ZhuAug 2005
Incorporating Time-Dependent Covariate in the Cox Proportional Hazards Models: the LVAR ApproachYali LiuBruce A. CraigMay 2005
Meta-Analytic Approaches for Microarray DataJohn StevensRebecca W. DoergeMay 2005
An Inferential Approach to Protein Backbone Nuclear Magnetic Resonance AssignmentOlga VitekBruce A. Craig, Chris Bailey-KelloggMay 2005
Stochastic Volatility Stock Price - Coefficient Estimation and Option Pricing Using a Recombining Tree and Sharp Estimation of the Almost-Sure Lyapunov Exponent for the Anderson Model in Continuous SpaceIonut FlorescuFrederi G. ViensDec 2004
A Two-Step Procedure for Multiple Pairwise Comparisons in Microarray ExperimentsHongmei JiangRebecca W. DoergeDec 2004
Motif Discovery via Context Dependent ModelsChuancai WangBruce A. Craig, Jun XieDec 2004
Model Selection for High Deimnsional Problems with Application to Function EstimationArijit ChakrabartiJayanta K. GhoshAug 2004
Limit Theorems for Reinforced Random Walks on TreesAndrea CollevecchioBurgess DavisAug 2004
Estimation of Parameters in Nonlinear Models with Dependent DataZhen JiangGeorge P. McCabeAug 2004
Estimation of the Distribution of Protein Requirements in a PopulationCraig JohnsonGeorge P. McCabeAug 2004
A Study of Random Field Models in Fitting Unspecified Data Generating Processes: Thoery and ApplicationsYu QinSeongjoo SongAug 2004
Some Classical and Bayesian Nonparametric Regression Methods in a Longitudinal Marginal ModelJeonggang (Martin) SeoJayanta K. GhoshAug 2004
Quantitative Trait Locus Analysis in PolyploidsDachuang CaoRebecca W. Doerge, Bruce A. CraigMay 2004
A New Statistical Model Combining Strength and Binary Choice with Applications to Paired Comparison ProblemsDavid AnnisBruce A. CraigDec 2003
Statistical Analysis of Medical ImagesNels GrevstadChong GuAug 2003
Finite Mixture for Clustering, Dimension Reduction and Privacy Preserving Data MiningXiaodong LinMichael ZhuAug 2003
Nonparametric Mixed-Effect ModelsPing MaChong GuAug 2003
On Some Empirical Bayes and Statistical Selection and Ranking ProceduresLin (Colin) ChenThomas M. SellkeMay 2003
Smoothing Spline Regression: Scalable Computation and Cross ValidationYoung-Ju KimChong GuMay 2003
Penalized Likelihood Density Estimation: Cross Validation and Some Small TheoriesJingyuan WangChong GuMay 2003
Bayesian Analysis of Nonparametric Regression ProblemsMessan (Charles) Amewou-AtissoJayanta K. GhoshAug 2002
Statistical Issues in the Design and Analysis of Spotted Microarray ExperimentsMichael Alan BlackRebecca W. DoergeAug 2002
On Semiparametric Regression Via WaveletsLeming QuMary Ellen BockAug 2002
Limit Theorem for the Spread of Branching Process with Stabilizing DriftOlga KorostelevaThomas M. SellkeMay 2002
Hedging of Options When the Price Process Has Jumps Whose Arrival Rate Depends on the Price HistoryKiseop LeePhilip ProtterMay 2002
Variable Selection Methodology for High-Dimensional Multivariate Binary Data with Application to Microbial Community DNA Fingerprint AnalysisJayson WilburRebecca W. Doerge, Jayanta K. GhoshMay 2002
Nonparametric Regression and Density Estimation in Besov Spaced via WaveletsEric ChickenTianwen Tony Cai, William J. StuddenDec 2001
Choice of Priors for Hierarchical Models: Admissibility and ComputationDejun TangMary Ellen Bock, James O. BergerDec 2001
On Some Statistical Inference Problems Using Empirical Bayes ApproachJianjun LiShanti S. GuptaAug 2001
Optimal Designs for Estimating the Path of a Stochastic ProcessBhramar MukherjeeWilliam J. StuddenAug 2001
Null Model Methods for Cluster Analysis of Gene Expression DataBrian MunnekeRebecca W. DoergeAug 2001
Bayesian Model Selection for High Dimensional Models with Prediction Error Loss and 0-1 Loss.Nitai MukhopadhyayJames O. Berger, Jayanta K. GhoshAug 2000
Some Contributions to Stochastic GeometryWen-Chi TsaiAnirban DasGuptaAug 2000
Convergence of the Euler Scheme for Stochastic Differential EquationsLiqing YanPhilip ProtterAug 2000
Filtering and Estimation of Noise Contaminated Chaotic Time SeriesJason H. StoverSteven P. LalleyMay 2000
Laura Di DomenicoMary Ellen BockDec 1999
Estimation, Testing, and Forecasting for Long Memory ProcessesChuanbo ZangAnirban DasGuptaAug 1999
Multiple Decision Theory: Ranking and Selection RulesXun LinShanti S. GuptaMay 1999
Limit Theorems for the Minimal Position in a Branching Random Walk with Independent Logconcave DisplacementsMarkus BachmannThomas M. SellkeDec 1998
Subsampling methods for stochastic process based on Poisson samplesZusheng (Shawn) JinGeorge P. McCabeDec 1998
Development of Expected Posterior Prior Distributions for Model ComparisonJose Miguel PerezJames O. Berger, Shanti S. GuptaDec 1998
Unified Bayesian and Conditional Frequentist Testing ProceduresSarat C. DassJames O. Berger, Mary Ellen BockAug 1998
Semiparametric Bayesian Analysis: Selection Models and Meteorological ApplicationsJaeyong LeeJames O. Berger, Thomas M. SellkeAug 1998