[1] K. L. Simonsen, G. A. Churchill, and C. F. Aquadro, “Properties of statistical tests of neutrality for DNA polymorphism data," Genetics, vol. 141, pp. 413–429, 1995. (Times cited: 195, Journal Impact Factor: 4.138)
[2] K. L. Simonsen and G. A. Churchill, “A Markov Chain model of coalescence with recombination," Theoretical Population Biology, vol. 52, no. 1, pp. 43–59, 1997. (Times cited: 7, Journal Impact Factor: 2.481)
[3] K. L. Simonsen, N. L. Kaplan, and E. R. Martin, “A Monte-Carlo permutation approach to choosing an affection status model for bipolar affective disorder," Genetic Epidemiology, vol. 14, pp. 681–686, 1997. (Journal Impact Factor: 3.038)
[4] M. L. Wayne and K. L. Simonsen, “Statistical tests of neutrality in the age of weak selection," Trends in Ecology and Evolution, vol. 13, pp. 213–253, 1998. (Times cited: 36, Journal Impact Factor: 12.938)
[5] L. M. McIntyre, E. R. Martin, N. L. Kaplan, and K. L. Simonsen, “Circumventing multiple testing: A multilocus Monte Carlo approach to testing for association," Genetic Epidemiology, vol. 19, no. 1, pp. 18–29, 2000. (Times cited: 31, Journal Impact Factor: 3.038)
[6] K. L. Simonsen and L. M. McIntyre, “Using alpha wisely: Improving power to detect multiple QTL," Statistical Applications in Genetics and Molecular Biology, vol. 3, no. 1, article 1, 2004. http://www.bepress.com/sagmb/vol3/iss1/1 (Times downloaded: 221)
[7] K.
Verhoeven, K. L. Simonsen, and L. M. McIntyre, 2005. “Implementing false
discovery rate control: increasing your
power". Oikos, A Journal of Ecology,
vol. 108, no, 3, pp. 643 – 647. (Times cited:
2, Journal Impact Factor: 2.901)
[8] K. Verhoeven and K. L. Simonsen, 2005. “Genomic haplotype blocks may not accurately reflect spatial variation in historic recombination intensity". Molecular Biology and Evolution vol. 22, pp. 735 – 740. (Times cited: 1, Journal Impact Factor: 6.355)
[9] C. J. Coffman, R. W. Doerge, K. L. Simonsen, K.
Nichols, C. Duarte, R. Wolfinger, and L. M. McIntyre. “Model Selection in Binary
Trait Locus Mapping". Genetics, vol.
170, pp. 1281 – 1297, 2005. (Journal Impact Factor: 4.138)
(times cited as of 8/05)
[10] B. Munneke, K. Sclauch, K. L. Simonsen, B. Beavis
and R. W. Doerge, 2005.``Adding Confidence to Gene Expression Clustering'' Genetics,
to appear August 2005.
[11] J. Irizarry, K. L. Simonsen, and D. M. Abraham, 2005. “Effect of Safety and Environmental Variables on Task Durations in Steel Erection". Accepted to Journal of Construction Engineering and Management, 2005. (Journal Impact Factor: 0.284)
[12] J. Irizarry, K. L. Simonsen, and D. M.
Abraham, 2005. “Safety and environmental
variables: effect on steel erection task durations” Referreed conference paper, to be presented
at the 3rd International Structural
Engineering and Construction Conference to be held in
[13] P. Sutinen, A. J. Brammer, K. L. Simonsen, K. Koskimies, J. Starck, and I. Pyykko. “Vibration white finger hand-arm vibration syndrome (HAVS)".
[14] SIMCORE: Software for SImulating COalescence with REcombination, sequence generation, trait generation, and data analysis. (http://www.stat.purdue.edu/~simonsen/simcore/) In the process of being adopted by SAS Institute for incorporation into SAS/Genetics software, as PROC SIMCORE.
[15] AlphaWisely. Software for analyzing genetic data to detect Quantitative Trait Loci (QTL) using multiple False Discovery Rate (FDR) controlling procedures.
[16]
K.
L. Simonsen, 2003. “A general probability model for the inheritance of binary
traits". Technical Report #TR-03-04, Purdue University Statistics
Department, 2003.